##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index15_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	24825102	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.897945394141786	33.0	31.0	34.0	30.0	34.0
2	31.9896522076727	33.0	31.0	34.0	30.0	34.0
3	32.040451475284975	34.0	31.0	34.0	30.0	34.0
4	35.5013119784966	37.0	35.0	37.0	33.0	37.0
5	35.50680307375978	37.0	35.0	37.0	33.0	37.0
6	35.50944709109352	37.0	35.0	37.0	33.0	37.0
7	35.42270005577419	37.0	35.0	37.0	33.0	37.0
8	35.42098175467718	37.0	35.0	37.0	33.0	37.0
9	36.94146932407367	39.0	37.0	39.0	33.0	39.0
10-14	37.337339770044046	39.2	37.2	39.4	33.0	39.4
15-19	38.39303153719167	40.0	38.0	41.0	33.0	41.0
20-24	38.210831649352336	40.0	38.0	41.0	33.2	41.0
25-29	38.12051857833253	40.0	38.0	41.0	33.0	41.0
30-34	38.018870327300164	40.0	38.0	41.0	33.0	41.0
35-39	37.795684416523244	40.0	37.0	41.0	32.6	41.0
40-44	37.422574207348674	39.6	36.4	41.0	31.4	41.0
45-49	37.00405821494712	39.0	35.4	41.0	30.8	41.0
50-54	36.19347751320417	38.2	34.6	40.0	29.8	40.6
55-59	36.0687898160499	38.0	34.6	40.0	29.4	41.0
60-64	35.55451359676186	37.0	34.0	40.0	28.8	41.0
65-69	35.06180126067559	36.2	34.0	39.4	29.0	41.0
70-74	34.2503112776737	35.0	33.8	38.2	28.2	40.4
75-79	33.371798440143365	35.0	33.0	36.6	27.2	39.0
80-84	32.54201329766943	35.0	33.0	35.6	26.2	37.2
85-89	31.683853617197627	35.0	32.2	35.0	25.0	36.2
90	31.18020933005633	35.0	32.0	35.0	24.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	205.0
11	2192.0
12	6580.0
13	13239.0
14	21100.0
15	29152.0
16	36269.0
17	42702.0
18	50011.0
19	58542.0
20	69620.0
21	82405.0
22	97253.0
23	118697.0
24	144974.0
25	179327.0
26	221901.0
27	273521.0
28	334342.0
29	405060.0
30	501013.0
31	625406.0
32	788187.0
33	1023481.0
34	1389308.0
35	1995198.0
36	3082320.0
37	4597762.0
38	5304225.0
39	3226392.0
40	104718.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	26.639562142142204	12.317004564217706	10.046700663473027	50.99673263016706
2	22.204448343097706	18.840171019499667	35.29675463357466	23.65862600382797
3	25.63237848281193	21.037285236999338	22.661240193463833	30.6690960867249
4	27.67613298412578	27.483763372003217	19.173093903045732	25.667009740825268
5	29.32514548033317	29.8631144650719	21.36195172495095	19.449788329643983
6	24.360834017146217	32.75560425278889	21.553498324308727	21.330063405756167
7	21.463482948864456	19.01113009913898	37.28147412299083	22.243912829005733
8	21.525133978768128	22.22970390505482	29.061759956970118	27.18340215920694
9	21.73611679148506	21.028375617790292	31.34539175900633	25.89011583171831
10-14	24.528410868699382	26.274208181258835	24.70062165620805	24.49675929383373
15-19	24.890091139539468	25.15755650593661	25.120922102273713	24.831430252250208
20-24	24.64812611841144	25.401984704228926	25.466061327767715	24.483827849591922
25-29	24.50972912867609	25.45091761037393	25.3888429386936	24.650510322256384
30-34	24.523726345153158	25.384193949985296	25.35106762136106	24.74101208350049
35-39	24.534740192786426	25.529625127339255	25.314053552242825	24.62158112763149
40-44	24.496641294204412	25.382060559253826	25.447352076366446	24.67394607017532
45-49	24.433497553615833	25.424290070961803	25.39076496825054	24.751447407171828
50-54	24.458040364568383	25.51137155446806	25.431881458353782	24.598706622609775
55-59	24.493192495128003	25.44814130097371	25.37674010455955	24.681926099338742
60-64	24.380529222287148	25.465828965946745	25.50717621961346	24.64646559215265
65-69	24.40891667204383	25.57609347288673	25.49194709504053	24.52304276002891
70-74	24.462620125166726	25.514281445328297	25.40314376787679	24.61995466162819
75-79	24.43229610299835	25.462836966579676	25.4866910683867	24.61817586203527
80-84	24.385157913428063	25.59329159175408	25.50262708338637	24.518923411431487
85-89	24.471816742485473	25.554936248734517	25.424799103622124	24.548447905157886
90	24.210674641489668	25.631458876908454	25.643970730641097	24.513895750960778
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.63629477230927
2	45.86307434692568
3	56.301474569536836
4	53.34314272495105
5	48.774933809977156
6	45.69089742290238
7	43.70739577787019
8	48.70853613797506
9	47.62623262320337
10-14	49.025170162533115
15-19	49.72152139178967
20-24	49.13195396800336
25-29	49.16023945093247
30-34	49.264738428653644
35-39	49.15632132041791
40-44	49.17058736437973
45-49	49.18494496078766
50-54	49.05674698717816
55-59	49.175118594466745
60-64	49.026994814439796
65-69	48.93195943207274
70-74	49.082574786794915
75-79	49.05047196503362
80-84	48.90408132485955
85-89	49.02026464764336
90	48.724570392450445
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	19.0
1	19.0
2	20.5
3	25.0
4	38.5
5	47.0
6	58.0
7	83.5
8	112.0
9	178.0
10	228.0
11	263.0
12	348.5
13	490.5
14	714.0
15	1013.0
16	1545.5
17	2528.5
18	4177.0
19	7121.0
20	9034.0
21	11992.5
22	20114.0
23	32142.5
24	48605.5
25	71480.5
26	101432.5
27	138845.0
28	180252.5
29	224993.0
30	249064.0
31	273536.0
32	323281.5
33	379115.5
34	439900.0
35	498219.0
36	559708.5
37	627875.5
38	686701.5
39	735752.5
40	760750.0
41	776714.0
42	809187.0
43	840375.0
44	859748.0
45	866914.0
46	865591.5
47	859719.5
48	858629.0
49	858162.0
50	856708.0
51	847801.0
52	835004.0
53	819326.5
54	811288.5
55	809270.5
56	795172.5
57	777090.0
58	750742.5
59	716818.5
60	699490.0
61	680182.5
62	639599.5
63	587908.5
64	526742.5
65	466044.5
66	403712.0
67	340122.5
68	281627.5
69	226488.0
70	198639.0
71	174109.5
72	129131.0
73	92615.0
74	62387.5
75	38607.0
76	22552.5
77	12007.5
78	5773.5
79	2638.0
80	1626.0
81	1183.0
82	552.5
83	285.0
84	168.5
85	106.0
86	66.5
87	50.0
88	35.5
89	20.0
90	16.0
91	21.5
92	23.5
93	16.5
94	10.5
95	6.5
96	4.5
97	3.5
98	2.5
99	2.0
100	2.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.2931589163259027
2	0.22273825904119146
3	0.28065947120781215
4	0.30352745378447993
5	0.2585890684356503
6	0.17117351622563323
7	0.21962850343978443
8	0.24538469167216312
9	0.2279305841321417
10-14	0.202808431562537
15-19	0.17733824416914784
20-24	0.20548797745121045
25-29	0.03569451597822237
30-34	0.002977631270155506
35-39	0.0034819595101764334
40-44	0.007932293692086341
45-49	0.010104288796074232
50-54	0.005561306455055049
55-59	0.002368570328532789
60-64	0.008747597492247967
65-69	0.003945200305722813
70-74	1.514595992395117E-4
75-79	8.620306977993484E-5
80-84	0.0024733030301345793
85-89	8.636419701316837E-4
90	0.0025901202742288835
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.4825102E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	55.44200799224877
#Duplication Level	Relative count
1	100.0
2	31.842572158033665
3	17.28114587390194
4	10.826950538751136
5	7.440823921415898
6	5.571422389545199
7	4.197498809987451
8	3.415336016270717
9	2.8311480375611233
10++	32.95902029512311
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	5152765	2.5721073	5.1828303	1
GAAGA	5267825	2.5614722	5.098311	2
CCTGG	5141175	2.5527825	6.167882	1
CTTCT	5421475	2.5121467	5.405416	1
CTGGA	4973715	2.4374583	8.821981	1
TCCAG	4885840	2.356004	5.694127	2
CTCCT	4875765	2.3012447	7.4853687	1
CTGGG	4497860	2.2697442	8.411634	1
CAGGA	4524055	2.2288527	5.483477	1
CTTCA	4729855	2.203295	5.6669617	1
CCCAG	4453675	2.1874986	7.2825522	1
CTCCA	4588600	2.1771958	8.034852	1
CAGAA	4399535	2.1049685	5.0188565	1
CTCTG	4252395	2.0397317	6.2557945	1
CTGGC	3791065	1.8824035	5.3262525	1
TGGAA	3855035	1.8646158	5.272345	2
CTGAA	3888410	1.8506044	5.352962	1
CTCAG	3622610	1.7468611	6.10651	1
CTGGT	3406195	1.6604604	5.0249214	1
CTTGG	3353445	1.6347457	5.2698855	1
>>END_MODULE
